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RSS BotMB to Lobste.rsEnglish · 1 month ago

Suffix BWT vs cyclic shift BWT, and fast computation

purplesyringa.moe

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Suffix BWT vs cyclic shift BWT, and fast computation

purplesyringa.moe

RSS BotMB to Lobste.rsEnglish · 1 month ago
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Intended audience: data compression geeks. The Burrows-Wheeler transform takes a string as an input and rearranges its characters, grouping them by context. It is invertible with 𝒪 ( 1 ) additional input, and together these properties give it a place in data compression and genome alignment. What Wikipedia doesn’t tell you is that there are actually two variants of BWT, with subtly different performance characteristics and simplicity. These differences seem to be largely undocumented, so this post is me trying to make sense of it.

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